Transcriptome and RNA profiles

All profiles in the Transcriptome and RNA domain, version 0.1.0-alpha.5. The Review column shows each profile’s review status. In this release every profile is candidate or draft, and none has been scientifically reviewed yet. A profile describes whether two ports fit together; it does not establish scientific validity or clinical safety.

Profile	Name	Stage	Review	Required items
Alternative Splicing Event	alternative-splicing-event	WAVE_2	candidate	4
Differential Expression	differential-expression	WAVE_2	candidate	4
Expression Signature	expression-signature	WAVE_2	candidate	4
Expression Trajectory	expression-trajectory	WAVE_2	candidate	6
Fold Change Vector	fold-change-vector	WAVE_2	candidate	6
Gene Expression Counts	gene-expression-counts	WAVE_2	candidate	6
Gene Set Activity	gene-set-activity	WAVE_2	candidate	6
lncRNA Expression	lncrna-expression	WAVE_2	candidate	4
microRNA Expression	microrna-expression	WAVE_2	candidate	4
Nascent Transcription	nascent-transcription	WAVE_2	candidate	4
Normalized Gene Expression	normalized-gene-expression	WAVE_2	candidate	6
Pathway Activity	pathway-activity	WAVE_2	candidate	4
Pseudobulk Expression	pseudobulk-expression	WAVE_2	candidate	4
RNA Editing Event	rna-editing-event	WAVE_2	candidate	4
RNA Sequence	rna-sequence	WAVE_2	candidate	6
RNA Structure	rna-structure	WAVE_2	candidate	4
RNA Velocity	rna-velocity	WAVE_2	candidate	4
Single-cell Expression Matrix	single-cell-expression-matrix	WAVE_2	candidate	6
Small RNA Abundance	small-rna-abundance	WAVE_2	candidate	7
Spatial Transcriptomics Matrix	spatial-transcriptomics-matrix	WAVE_2	candidate	6
Splice Junction Counts	splice-junction-counts	WAVE_2	candidate	4
Transcript Expression	transcript-expression	WAVE_2	candidate	4
Transcript Isoform Usage	transcript-isoform-usage	WAVE_2	candidate	4
Transcription Factor Activity	transcription-factor-activity	WAVE_2	candidate	4
Transcriptional State	transcriptional-state	WAVE_2	candidate	4

Each profile links to its JSON definition. See the catalogue for search, filters and what the Stage and Review columns mean.