ReferencesBiosimulant LibraryDomain Packs

Domain Packs

Domain-specific BioModules are distributed separately from the core Biosimulant runtime.

What lives in the core repo

The local Biosimulant checkout focuses on the runtime:

  • BioWorld
  • BioModule
  • WiringBuilder
  • packaging and manifests
  • SimUI
  • small runtime demos under examples

It does not bundle a full neuroscience or ecology pack in this repository.

Where domain packs live

For domain-specific assets such as ecology, neuroscience, or hybrid ONNX examples, use the public companion repositories listed from the Biosimulant models organization. The checked-in examples README points to:

Those repositories contain the actual model and lab assets, packaging examples, and domain-oriented demos.

How to approach them

  1. Use pip install biosimulant for the runtime and local Python examples.
  2. Clone or install the companion domain package you want to work with.
  3. Follow that package’s own import paths and README examples.
  4. Use biosimulant labs package or biosimulant labs release ... when you want to package or upload a lab into Biosimulant.

Public guidance

Because domain packages can evolve independently, this documentation does not freeze a synthetic biosim.packs.* API that may not exist in your installed package. Follow the import path and examples published by the package you actually installed.

Next Steps

Visualization ContractSimUI