Example Simulations
This section is a public gallery of the labs you can run in Biosimulant. Each example summarizes the science, shows a screenshot of an actual run, and links straight to the runnable lab on the public Hub.
Every example below is a real, published lab on biosimulant.com/hub. Click the Hub link inside an example, then press Run — no install required.
How to run (web UI)
- Open the example you want.
- Click the Hub link to jump to the lab page on biosimulant.com.
- Press Run and explore the charts and structure views.
How to run locally
The companion source repositories (models-ecology, models-autodock-vina, models-diffdock, models-boltz, models-microbiology-hello-world) include biosimulant labs package instructions in each lab’s README. The desktop app’s lab importer also accepts a path to any of these labs directly.
For the runtime and SimUI demos, install:
pip install "biosimulant[ui]"and start with examples/ui_demo.py or examples/multi_module_ui_demo.py.
Current example simulations
- Microbiology: Hello World
- Ecology: Lotka–Volterra
- Ecology: Rosenzweig–MacArthur
- Ecology: Multispecies Competition
- Ecology: ATP Pathway Cooperation
- Ecology: Gene-Drive Suppression
- Ecology: Mosquito Life Stages
- Docking: AutoDock Vina
- Docking: DiffDock-L
- Structure: Boltz-2 Affinity
- Desktop Plugin Samples