<!-- Source: https://docs.biosimulant.com/standards/model-compatibility/catalogue-domains/evolution -->

# Evolution and phylogenetics profiles

All profiles in the Evolution and phylogenetics domain, version 0.1.0-alpha.5. The Review column shows each profile's review status. In this release every profile is candidate or draft, and none has been scientifically reviewed yet. A profile describes whether two ports fit together; it does not establish scientific validity or clinical safety.

| Profile | Name | Stage | Review | Required items |
|---|---|---:|---:|---:|
| <span id="adaptation-score"></span>[Adaptation Score](/standards/model-compatibility/profiles/evolution/adaptation-score/v0.1.json) | `adaptation-score` | WAVE_2 | candidate | 7 |
| <span id="allele-frequency-trajectory"></span>[Allele Frequency Trajectory](/standards/model-compatibility/profiles/evolution/allele-frequency-trajectory/v0.1.json) | `allele-frequency-trajectory` | WAVE_2 | candidate | 6 |
| <span id="ancestral-sequence"></span>[Ancestral Sequence](/standards/model-compatibility/profiles/evolution/ancestral-sequence/v0.1.json) | `ancestral-sequence` | WAVE_2 | candidate | 6 |
| <span id="ancestral-state"></span>[Ancestral State](/standards/model-compatibility/profiles/evolution/ancestral-state/v0.1.json) | `ancestral-state` | WAVE_2 | candidate | 4 |
| <span id="coalescent-tree"></span>[Coalescent Tree](/standards/model-compatibility/profiles/evolution/coalescent-tree/v0.1.json) | `coalescent-tree` | WAVE_2 | candidate | 4 |
| <span id="divergence-time"></span>[Divergence Time](/standards/model-compatibility/profiles/evolution/divergence-time/v0.1.json) | `divergence-time` | WAVE_2 | candidate | 7 |
| <span id="effective-population-size"></span>[Effective Population Size](/standards/model-compatibility/profiles/evolution/effective-population-size/v0.1.json) | `effective-population-size` | WAVE_2 | candidate | 4 |
| <span id="evolutionary-distance"></span>[Evolutionary Distance](/standards/model-compatibility/profiles/evolution/evolutionary-distance/v0.1.json) | `evolutionary-distance` | WAVE_2 | candidate | 7 |
| <span id="evolutionary-simulation-state"></span>[Evolutionary Simulation State](/standards/model-compatibility/profiles/evolution/evolutionary-simulation-state/v0.1.json) | `evolutionary-simulation-state` | WAVE_2 | candidate | 4 |
| <span id="extinction-event"></span>[Extinction Event](/standards/model-compatibility/profiles/evolution/extinction-event/v0.1.json) | `extinction-event` | WAVE_2 | candidate | 4 |
| <span id="fitness-landscape"></span>[Fitness Landscape](/standards/model-compatibility/profiles/evolution/fitness-landscape/v0.1.json) | `fitness-landscape` | WAVE_2 | candidate | 4 |
| <span id="fitness-value"></span>[Fitness Value](/standards/model-compatibility/profiles/evolution/fitness-value/v0.1.json) | `fitness-value` | WAVE_2 | candidate | 7 |
| <span id="gene-family"></span>[Gene Family](/standards/model-compatibility/profiles/evolution/gene-family/v0.1.json) | `gene-family` | WAVE_2 | candidate | 6 |
| <span id="horizontal-transfer-event"></span>[Horizontal Transfer Event](/standards/model-compatibility/profiles/evolution/horizontal-transfer-event/v0.1.json) | `horizontal-transfer-event` | WAVE_2 | candidate | 4 |
| <span id="linkage-disequilibrium"></span>[Linkage Disequilibrium](/standards/model-compatibility/profiles/evolution/linkage-disequilibrium/v0.1.json) | `linkage-disequilibrium` | WAVE_2 | candidate | 4 |
| <span id="mutation-rate"></span>[Mutation Rate](/standards/model-compatibility/profiles/evolution/mutation-rate/v0.1.json) | `mutation-rate` | WAVE_2 | candidate | 7 |
| <span id="orthology-relation"></span>[Orthology Relation](/standards/model-compatibility/profiles/evolution/orthology-relation/v0.1.json) | `orthology-relation` | WAVE_2 | candidate | 4 |
| <span id="paralogy-relation"></span>[Paralogy Relation](/standards/model-compatibility/profiles/evolution/paralogy-relation/v0.1.json) | `paralogy-relation` | WAVE_2 | candidate | 4 |
| <span id="phylogenetic-network"></span>[Phylogenetic Network](/standards/model-compatibility/profiles/evolution/phylogenetic-network/v0.1.json) | `phylogenetic-network` | WAVE_2 | candidate | 6 |
| <span id="phylogenetic-tree"></span>[Phylogenetic Tree](/standards/model-compatibility/profiles/evolution/phylogenetic-tree/v0.1.json) | `phylogenetic-tree` | WAVE_2 | candidate | 6 |
| <span id="population-genetic-statistic"></span>[Population Genetic Statistic](/standards/model-compatibility/profiles/evolution/population-genetic-statistic/v0.1.json) | `population-genetic-statistic` | WAVE_2 | candidate | 6 |
| <span id="recombination-rate"></span>[Recombination Rate](/standards/model-compatibility/profiles/evolution/recombination-rate/v0.1.json) | `recombination-rate` | WAVE_2 | candidate | 7 |
| <span id="selection-coefficient"></span>[Selection Coefficient](/standards/model-compatibility/profiles/evolution/selection-coefficient/v0.1.json) | `selection-coefficient` | WAVE_2 | candidate | 4 |
| <span id="speciation-event"></span>[Speciation Event](/standards/model-compatibility/profiles/evolution/speciation-event/v0.1.json) | `speciation-event` | WAVE_2 | candidate | 4 |
| <span id="substitution-model"></span>[Substitution Model](/standards/model-compatibility/profiles/evolution/substitution-model/v0.1.json) | `substitution-model` | WAVE_2 | candidate | 4 |

Each profile links to its JSON definition. See the [catalogue](/standards/model-compatibility/catalogue) for search, filters and what the Stage and Review columns mean.
