<!-- Source: https://docs.biosimulant.com/standards/model-compatibility/catalogue-domains/epigenome -->

# Epigenome and regulation profiles

All profiles in the Epigenome and regulation domain, version 0.1.0-alpha.5. The Review column shows each profile's review status. In this release every profile is candidate or draft, and none has been scientifically reviewed yet. A profile describes whether two ports fit together; it does not establish scientific validity or clinical safety.

| Profile | Name | Stage | Review | Required items |
|---|---|---:|---:|---:|
| <span id="allele-specific-methylation"></span>[Allele Specific Methylation](/standards/model-compatibility/profiles/epigenome/allele-specific-methylation/v0.1.json) | `allele-specific-methylation` | WAVE_2 | candidate | 4 |
| <span id="atac-peak-counts"></span>[ATAC Peak Counts](/standards/model-compatibility/profiles/epigenome/atac-peak-counts/v0.1.json) | `atac-peak-counts` | WAVE_2 | candidate | 4 |
| <span id="chip-seq-peaks"></span>[ChIP-seq Peaks](/standards/model-compatibility/profiles/epigenome/chip-seq-peaks/v0.1.json) | `chip-seq-peaks` | WAVE_2 | candidate | 4 |
| <span id="chromatin-accessibility"></span>[Chromatin Accessibility](/standards/model-compatibility/profiles/epigenome/chromatin-accessibility/v0.1.json) | `chromatin-accessibility` | WAVE_2 | candidate | 4 |
| <span id="chromatin-contact-matrix"></span>[Chromatin Contact Matrix](/standards/model-compatibility/profiles/epigenome/chromatin-contact-matrix/v0.1.json) | `chromatin-contact-matrix` | WAVE_2 | candidate | 6 |
| <span id="chromatin-state"></span>[Chromatin State](/standards/model-compatibility/profiles/epigenome/chromatin-state/v0.1.json) | `chromatin-state` | WAVE_2 | candidate | 4 |
| <span id="cpg-methylation-profile"></span>[CpG Methylation Profile](/standards/model-compatibility/profiles/epigenome/cpg-methylation-profile/v0.1.json) | `cpg-methylation-profile` | WAVE_2 | candidate | 4 |
| <span id="dna-methylation-fraction"></span>[DNA Methylation Fraction](/standards/model-compatibility/profiles/epigenome/dna-methylation-fraction/v0.1.json) | `dna-methylation-fraction` | WAVE_2 | candidate | 7 |
| <span id="enhancer-activity"></span>[Enhancer Activity](/standards/model-compatibility/profiles/epigenome/enhancer-activity/v0.1.json) | `enhancer-activity` | WAVE_2 | candidate | 4 |
| <span id="epigenetic-clock"></span>[Epigenetic Clock](/standards/model-compatibility/profiles/epigenome/epigenetic-clock/v0.1.json) | `epigenetic-clock` | WAVE_2 | candidate | 6 |
| <span id="epigenetic-trajectory"></span>[Epigenetic Trajectory](/standards/model-compatibility/profiles/epigenome/epigenetic-trajectory/v0.1.json) | `epigenetic-trajectory` | WAVE_2 | candidate | 8 |
| <span id="footprint-score"></span>[Footprint Score](/standards/model-compatibility/profiles/epigenome/footprint-score/v0.1.json) | `footprint-score` | WAVE_2 | candidate | 7 |
| <span id="hic-contact-map"></span>[Hi-C Contact Map](/standards/model-compatibility/profiles/epigenome/hic-contact-map/v0.1.json) | `hic-contact-map` | WAVE_2 | candidate | 6 |
| <span id="histone-modification-signal"></span>[Histone Modification Signal](/standards/model-compatibility/profiles/epigenome/histone-modification-signal/v0.1.json) | `histone-modification-signal` | WAVE_2 | candidate | 4 |
| <span id="methylation-age"></span>[Methylation Age](/standards/model-compatibility/profiles/epigenome/methylation-age/v0.1.json) | `methylation-age` | WAVE_2 | candidate | 4 |
| <span id="methylation-beta-value"></span>[Methylation Beta Value](/standards/model-compatibility/profiles/epigenome/methylation-beta-value/v0.1.json) | `methylation-beta-value` | WAVE_2 | candidate | 7 |
| <span id="methylation-m-value"></span>[Methylation M Value](/standards/model-compatibility/profiles/epigenome/methylation-m-value/v0.1.json) | `methylation-m-value` | WAVE_2 | candidate | 7 |
| <span id="motif-accessibility"></span>[Motif Accessibility](/standards/model-compatibility/profiles/epigenome/motif-accessibility/v0.1.json) | `motif-accessibility` | WAVE_2 | candidate | 4 |
| <span id="nucleosome-positioning"></span>[Nucleosome Positioning](/standards/model-compatibility/profiles/epigenome/nucleosome-positioning/v0.1.json) | `nucleosome-positioning` | WAVE_2 | candidate | 4 |
| <span id="promoter-activity"></span>[Promoter Activity](/standards/model-compatibility/profiles/epigenome/promoter-activity/v0.1.json) | `promoter-activity` | WAVE_2 | candidate | 4 |
| <span id="regulatory-element-annotation"></span>[Regulatory Element Annotation](/standards/model-compatibility/profiles/epigenome/regulatory-element-annotation/v0.1.json) | `regulatory-element-annotation` | WAVE_2 | candidate | 4 |
| <span id="single-cell-epigenome"></span>[Single-cell Epigenome](/standards/model-compatibility/profiles/epigenome/single-cell-epigenome/v0.1.json) | `single-cell-epigenome` | WAVE_2 | candidate | 4 |
| <span id="spatial-epigenome"></span>[Spatial Epigenome](/standards/model-compatibility/profiles/epigenome/spatial-epigenome/v0.1.json) | `spatial-epigenome` | WAVE_2 | candidate | 4 |
| <span id="topological-domain"></span>[Topological Domain](/standards/model-compatibility/profiles/epigenome/topological-domain/v0.1.json) | `topological-domain` | WAVE_2 | candidate | 4 |
| <span id="transcription-factor-binding"></span>[Transcription Factor Binding](/standards/model-compatibility/profiles/epigenome/transcription-factor-binding/v0.1.json) | `transcription-factor-binding` | WAVE_2 | candidate | 4 |

Each profile links to its JSON definition. See the [catalogue](/standards/model-compatibility/catalogue) for search, filters and what the Stage and Review columns mean.
